The following items must be initialized for normal system operation after such cases as the battery being reconnected, or maintenance being performed on the vehicle:

Customization
For ownersIntermediate shaft speed sensor "A"
Description
This sensor detects the rotation speed of the counter gear. By comparing the
counter gear speed signal
(nc) with the direct clutch speed sensor signal (nt), the ecm detects the shift
timing of the gears and
approximately controls the engine torque and hydraulic pressure accord ...
On-vehicle inspection
Check ignition coil assembly and perform spark test
Notice:
in this section, the terms "cold" and "hot" refer to
the temperature of the coils. "Cold" means
approximately -10 to 50°c (14 to 122°f). "Hot" means
approximately 50 to 100°c (122 to 212 ...
Removal
Hint:
Use the same procedures for the rh side and lh side.
The procedures listed below are for the lh side.
When removing the moulding, heat the vehicle body and
moulding using a heat light.
Standard heating temperature
Notice:
Do not heat the vehicle body and moulding
excessively.
...